Cluster: Rep_3271_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_00010
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3271_c_41 | Rep_3271_c_41_13 | 20280 | 22682 | - | GT35 |
| CAZyme | Rep_3271_c_41 | Rep_3271_c_41_14 | 22760 | 24244 | - | GH77 |
| TF | Rep_3271_c_41 | Rep_3271_c_41_15 | 24363 | 25376 | - | LacI |
| TC | Rep_3271_c_41 | Rep_3271_c_41_16 | 25476 | 26321 | - | 3.A.1.1.45 |
| TC | Rep_3271_c_41 | Rep_3271_c_41_17 | 26321 | 27172 | - | 3.A.1.1.45 |
Gene ID: Rep_3271_c_41_13
Type: CAZyme
Location: 20280 - 22682 (-)
Type: CAZyme
Location: 20280 - 22682 (-)
Gene ID: Rep_3271_c_41_14
Type: CAZyme
Location: 22760 - 24244 (-)
Type: CAZyme
Location: 22760 - 24244 (-)
Gene ID: Rep_3271_c_41_15
Type: TF
Location: 24363 - 25376 (-)
Type: TF
Location: 24363 - 25376 (-)
Gene ID: Rep_3271_c_41_16
Type: TC
Location: 25476 - 26321 (-)
Type: TC
Location: 25476 - 26321 (-)
Gene ID: Rep_3271_c_41_17
Type: TC
Location: 26321 - 27172 (-)
Type: TC
Location: 26321 - 27172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3271_c_41_16 | vegan > omnivore | 1.01178 | 0.01287 |