Cluster: Rep_3271_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3271
- CGC Family ID: CGCFAM_06234
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_34 | Rep_3271_c_34_20 | 24979 | 26307 | + | 9.A.8.1.5 |
| CAZyme | Rep_3271_c_34 | Rep_3271_c_34_21 | 26637 | 30746 | + | GH33 |
| pfam | Rep_3271_c_34 | Rep_3271_c_34_22 | 31084 | 32709 | + | Resolvase | Recombinase | Zn_ribbon_recom | DUF4368 |
| TC | Rep_3271_c_34 | Rep_3271_c_34_23 | 32726 | 33577 | + | 9.A.8.1.5 |
Gene ID: Rep_3271_c_34_20
Type: TC
Location: 24979 - 26307 (+)
Type: TC
Location: 24979 - 26307 (+)
Gene ID: Rep_3271_c_34_21
Type: CAZyme
Location: 26637 - 30746 (+)
Type: CAZyme
Location: 26637 - 30746 (+)
Gene ID: Rep_3271_c_34_22
Type: pfam
Location: 31084 - 32709 (+)
Type: pfam
Location: 31084 - 32709 (+)
Gene ID: Rep_3271_c_34_23
Type: TC
Location: 32726 - 33577 (+)
Type: TC
Location: 32726 - 33577 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.