Cluster: Rep_3271_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3271
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3271_c_25 | Rep_3271_c_25_8 | 7008 | 8138 | - | GT28 |
| TC | Rep_3271_c_25 | Rep_3271_c_25_9 | 8252 | 9469 | - | 2.A.103.1.3 |
| TC | Rep_3271_c_25 | Rep_3271_c_25_10 | 9621 | 10607 | - | 9.B.146.1.3 |
Gene ID: Rep_3271_c_25_8
Type: CAZyme
Location: 7008 - 8138 (-)
Type: CAZyme
Location: 7008 - 8138 (-)
Gene ID: Rep_3271_c_25_9
Type: TC
Location: 8252 - 9469 (-)
Type: TC
Location: 8252 - 9469 (-)
Gene ID: Rep_3271_c_25_10
Type: TC
Location: 9621 - 10607 (-)
Type: TC
Location: 9621 - 10607 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3271_c_25_9 | vegetarian > vegan | 1.55178 | 0.01882 |