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Cluster: Rep_3271_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3271_c_20 Rep_3271_c_20_16 28947 30206 + 9.B.141.1.1
TF Rep_3271_c_20 Rep_3271_c_20_17 30522 31493 - LacI
STP Rep_3271_c_20 Rep_3271_c_20_18 31818 33251 + SBP_bac_1
TC Rep_3271_c_20 Rep_3271_c_20_19 33327 34220 + 3.A.1.1.36
TC Rep_3271_c_20 Rep_3271_c_20_20 34236 35057 + 3.A.1.1.39
CAZyme Rep_3271_c_20 Rep_3271_c_20_21 35081 36376 + GH13
CAZyme Rep_3271_c_20 Rep_3271_c_20_22 36382 38778 + GH31_15
CAZyme Rep_3271_c_20 Rep_3271_c_20_23 38847 41501 + CBM35 | CBM61 | CBM61 | GH27
Gene ID: Rep_3271_c_20_16
Type: TC
Location: 28947 - 30206 (+)
Gene ID: Rep_3271_c_20_17
Type: TF
Location: 30522 - 31493 (-)
Gene ID: Rep_3271_c_20_18
Type: STP
Location: 31818 - 33251 (+)
Gene ID: Rep_3271_c_20_19
Type: TC
Location: 33327 - 34220 (+)
Gene ID: Rep_3271_c_20_20
Type: TC
Location: 34236 - 35057 (+)
Gene ID: Rep_3271_c_20_21
Type: CAZyme
Location: 35081 - 36376 (+)
Gene ID: Rep_3271_c_20_22
Type: CAZyme
Location: 36382 - 38778 (+)
Gene ID: Rep_3271_c_20_23
Type: CAZyme
Location: 38847 - 41501 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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