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Cluster: Rep_3271_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3271_c_14 Rep_3271_c_14_4 2995 3948 + 3.A.1.1.20
TC Rep_3271_c_14 Rep_3271_c_14_5 3961 4845 + 3.A.1.1.48
pfam Rep_3271_c_14 Rep_3271_c_14_6 5019 5933 + DHDPS
pfam Rep_3271_c_14 Rep_3271_c_14_7 6113 6838 + Glucosamine_iso
CAZyme Rep_3271_c_14 Rep_3271_c_14_8 6919 8037 + CE9
TF Rep_3271_c_14 Rep_3271_c_14_9 8222 9016 + MerR
TC Rep_3271_c_14 Rep_3271_c_14_10 9062 9856 - 3.A.1.139.2
TC Rep_3271_c_14 Rep_3271_c_14_11 9853 10485 - 3.A.1.139.1
TC Rep_3271_c_14 Rep_3271_c_14_12 10526 11653 - 2.A.45.2.6
Gene ID: Rep_3271_c_14_4
Type: TC
Location: 2995 - 3948 (+)
Gene ID: Rep_3271_c_14_5
Type: TC
Location: 3961 - 4845 (+)
Gene ID: Rep_3271_c_14_6
Type: pfam
Location: 5019 - 5933 (+)
Gene ID: Rep_3271_c_14_7
Type: pfam
Location: 6113 - 6838 (+)
Gene ID: Rep_3271_c_14_8
Type: CAZyme
Location: 6919 - 8037 (+)
Gene ID: Rep_3271_c_14_9
Type: TF
Location: 8222 - 9016 (+)
Gene ID: Rep_3271_c_14_10
Type: TC
Location: 9062 - 9856 (-)
Gene ID: Rep_3271_c_14_11
Type: TC
Location: 9853 - 10485 (-)
Gene ID: Rep_3271_c_14_12
Type: TC
Location: 10526 - 11653 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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