Cluster: Rep_3271_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3271
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3271_c_13 | Rep_3271_c_13_11 | 9273 | 10754 | - | 4.A.7.1.1 |
| pfam | Rep_3271_c_13 | Rep_3271_c_13_12 | 10788 | 11237 | - | PTS_EIIA_2 |
| TF | Rep_3271_c_13 | Rep_3271_c_13_13 | 11814 | 12620 | - | HTH_AraC |
| CAZyme | Rep_3271_c_13 | Rep_3271_c_13_14 | 13257 | 17270 | + | GH33 |
| pfam | Rep_3271_c_13 | Rep_3271_c_13_15 | 17363 | 21097 | + | SLH | SLH | SLH | Flg_new | Flg_new | LRR_5 |
| CAZyme | Rep_3271_c_13 | Rep_3271_c_13_16 | 21162 | 23951 | + | GH136 |
Gene ID: Rep_3271_c_13_11
Type: TC
Location: 9273 - 10754 (-)
Type: TC
Location: 9273 - 10754 (-)
Gene ID: Rep_3271_c_13_12
Type: pfam
Location: 10788 - 11237 (-)
Type: pfam
Location: 10788 - 11237 (-)
Gene ID: Rep_3271_c_13_13
Type: TF
Location: 11814 - 12620 (-)
Type: TF
Location: 11814 - 12620 (-)
Gene ID: Rep_3271_c_13_14
Type: CAZyme
Location: 13257 - 17270 (+)
Type: CAZyme
Location: 13257 - 17270 (+)
Gene ID: Rep_3271_c_13_15
Type: pfam
Location: 17363 - 21097 (+)
Type: pfam
Location: 17363 - 21097 (+)
Gene ID: Rep_3271_c_13_16
Type: CAZyme
Location: 21162 - 23951 (+)
Type: CAZyme
Location: 21162 - 23951 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Species
Pseudoflavonifractor faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.