Cluster: Rep_3268_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3268
- CGC Family ID: CGCFAM_10895
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3268_c_16 | Rep_3268_c_16_8 | 8125 | 9228 | + | GT28 |
| TC | Rep_3268_c_16 | Rep_3268_c_16_9 | 9228 | 10304 | + | 4.D.2.1.5 |
| pfam | Rep_3268_c_16 | Rep_3268_c_16_10 | 10404 | 11312 | + | ROK |
| NULL(UNKNOWN) | Rep_3268_c_16 | Rep_3268_c_16_11 | 11318 | 11611 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3268_c_16 | Rep_3268_c_16_12 | 11689 | 14136 | + | 3.A.3.23.2 |
Gene ID: Rep_3268_c_16_8
Type: CAZyme
Location: 8125 - 9228 (+)
Type: CAZyme
Location: 8125 - 9228 (+)
Gene ID: Rep_3268_c_16_9
Type: TC
Location: 9228 - 10304 (+)
Type: TC
Location: 9228 - 10304 (+)
Gene ID: Rep_3268_c_16_10
Type: pfam
Location: 10404 - 11312 (+)
Type: pfam
Location: 10404 - 11312 (+)
Gene ID: Rep_3268_c_16_11
Type:
Location: 11318 - 11611 (-)
Type:
Location: 11318 - 11611 (-)
Gene ID: Rep_3268_c_16_12
Type: TC
Location: 11689 - 14136 (+)
Type: TC
Location: 11689 - 14136 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM12998
Species
HGM12998 sp900756495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3268_c_16_9 | vegetarian > vegan | 1.49992 | 0.00455 |