Cluster: Rep_3268_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3268
- CGC Family ID: CGCFAM_00409
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3268_c_2 | Rep_3268_c_2_56 | 61751 | 64024 | + | GH3 |
| TF | Rep_3268_c_2 | Rep_3268_c_2_57 | 64307 | 64990 | + | Trans_reg_C |
| STP | Rep_3268_c_2 | Rep_3268_c_2_58 | 64987 | 65886 | + | HATPase_c | HisKA |
| TC | Rep_3268_c_2 | Rep_3268_c_2_59 | 65996 | 66664 | + | 3.A.1.125.3 |
Gene ID: Rep_3268_c_2_56
Type: CAZyme
Location: 61751 - 64024 (+)
Type: CAZyme
Location: 61751 - 64024 (+)
Gene ID: Rep_3268_c_2_57
Type: TF
Location: 64307 - 64990 (+)
Type: TF
Location: 64307 - 64990 (+)
Gene ID: Rep_3268_c_2_58
Type: STP
Location: 64987 - 65886 (+)
Type: STP
Location: 64987 - 65886 (+)
Gene ID: Rep_3268_c_2_59
Type: TC
Location: 65996 - 66664 (+)
Type: TC
Location: 65996 - 66664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM12998
Species
HGM12998 sp900756495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.