Cluster: Rep_3268_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3268
- CGC Family ID: CGCFAM_09240
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3268_c_86 | Rep_3268_c_86_3 | 1306 | 2727 | + | 2.A.66.1.10 |
| TF | Rep_3268_c_86 | Rep_3268_c_86_4 | 2917 | 3975 | + | HTH_DeoR |
| pfam | Rep_3268_c_86 | Rep_3268_c_86_5 | 3991 | 4533 | + | GrpE |
| TC | Rep_3268_c_86 | Rep_3268_c_86_6 | 4589 | 6460 | + | 1.A.33.1.4 |
| sulfatase | Rep_3268_c_86 | Rep_3268_c_86_7 | 6547 | 7722 | + | S1_7 |
| CAZyme | Rep_3268_c_86 | Rep_3268_c_86_8 | 7844 | 9829 | + | GT39 |
Gene ID: Rep_3268_c_86_3
Type: TC
Location: 1306 - 2727 (+)
Type: TC
Location: 1306 - 2727 (+)
Gene ID: Rep_3268_c_86_4
Type: TF
Location: 2917 - 3975 (+)
Type: TF
Location: 2917 - 3975 (+)
Gene ID: Rep_3268_c_86_5
Type: pfam
Location: 3991 - 4533 (+)
Type: pfam
Location: 3991 - 4533 (+)
Gene ID: Rep_3268_c_86_6
Type: TC
Location: 4589 - 6460 (+)
Type: TC
Location: 4589 - 6460 (+)
Gene ID: Rep_3268_c_86_7
Type: sulfatase
Location: 6547 - 7722 (+)
Type: sulfatase
Location: 6547 - 7722 (+)
Gene ID: Rep_3268_c_86_8
Type: CAZyme
Location: 7844 - 9829 (+)
Type: CAZyme
Location: 7844 - 9829 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM12998
Species
HGM12998 sp900756495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.