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Cluster: Rep_3268_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3268_c_74 Rep_3268_c_74_8 7165 8067 + 3.A.1.1.28
TC Rep_3268_c_74 Rep_3268_c_74_9 8080 8913 + 3.A.1.1.39
pfam Rep_3268_c_74 Rep_3268_c_74_10 8957 9862 + DHDPS
pfam Rep_3268_c_74 Rep_3268_c_74_11 9876 10628 + Glucosamine_iso
CAZyme Rep_3268_c_74 Rep_3268_c_74_12 10619 11743 + CE9
TC Rep_3268_c_74 Rep_3268_c_74_13 11835 13040 + 3.A.1.1.22
Gene ID: Rep_3268_c_74_8
Type: TC
Location: 7165 - 8067 (+)
Gene ID: Rep_3268_c_74_9
Type: TC
Location: 8080 - 8913 (+)
Gene ID: Rep_3268_c_74_10
Type: pfam
Location: 8957 - 9862 (+)
Gene ID: Rep_3268_c_74_11
Type: pfam
Location: 9876 - 10628 (+)
Gene ID: Rep_3268_c_74_12
Type: CAZyme
Location: 10619 - 11743 (+)
Gene ID: Rep_3268_c_74_13
Type: TC
Location: 11835 - 13040 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3268_c_74_8 vegan > omnivore 1.04579 0.00701
Rep_3268_c_74_12 vegetarian > vegan 1.70790 0.00455

🧭 Explore Read Mapping of CGC

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