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Cluster: Rep_3267_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3267_c_48 Rep_3267_c_48_4 2469 3818 - GH3
NULL(UNKNOWN) Rep_3267_c_48 Rep_3267_c_48_5 3822 4682 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3267_c_48 Rep_3267_c_48_6 4904 6745 + 2.A.16.2.2
pfam Rep_3267_c_48 Rep_3267_c_48_7 6799 7530 - MatE
TC Rep_3267_c_48 Rep_3267_c_48_8 7530 8147 - 2.A.66.1.33
NULL(UNKNOWN) Rep_3267_c_48 Rep_3267_c_48_9 8335 10086 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3267_c_48 Rep_3267_c_48_10 10201 11469 - 2.A.1.11.3
TC Rep_3267_c_48 Rep_3267_c_48_11 11562 12239 - 2.A.115.2.8
Gene ID: Rep_3267_c_48_4
Type: CAZyme
Location: 2469 - 3818 (-)
Gene ID: Rep_3267_c_48_5
Type:
Location: 3822 - 4682 (-)
Gene ID: Rep_3267_c_48_6
Type: TC
Location: 4904 - 6745 (+)
Gene ID: Rep_3267_c_48_7
Type: pfam
Location: 6799 - 7530 (-)
Gene ID: Rep_3267_c_48_8
Type: TC
Location: 7530 - 8147 (-)
Gene ID: Rep_3267_c_48_9
Type:
Location: 8335 - 10086 (+)
Gene ID: Rep_3267_c_48_10
Type: TC
Location: 10201 - 11469 (-)
Gene ID: Rep_3267_c_48_11
Type: TC
Location: 11562 - 12239 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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