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Cluster: Rep_3267_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3267_c_3 Rep_3267_c_3_25 17891 19198 - GH13_20
TC Rep_3267_c_3 Rep_3267_c_3_26 19439 21256 + 3.A.1.106.8
TC Rep_3267_c_3 Rep_3267_c_3_27 21249 23105 + 3.A.1.135.5
pfam Rep_3267_c_3 Rep_3267_c_3_28 23190 24494 - MFS_1 | MFS_1
sulfatase Rep_3267_c_3 Rep_3267_c_3_29 24845 25609 + S1_2
TC Rep_3267_c_3 Rep_3267_c_3_30 25770 27050 + 2.A.47.4.8
TC Rep_3267_c_3 Rep_3267_c_3_31 27214 27918 + 3.A.1.122.6
pfam Rep_3267_c_3 Rep_3267_c_3_32 27944 31399 + FtsX | FtsX | MacB_PCD
pfam Rep_3267_c_3 Rep_3267_c_3_33 31503 31865 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC Rep_3267_c_3 Rep_3267_c_3_34 32059 34530 - 3.A.3.23.2
Gene ID: Rep_3267_c_3_25
Type: CAZyme
Location: 17891 - 19198 (-)
Gene ID: Rep_3267_c_3_26
Type: TC
Location: 19439 - 21256 (+)
Gene ID: Rep_3267_c_3_27
Type: TC
Location: 21249 - 23105 (+)
Gene ID: Rep_3267_c_3_28
Type: pfam
Location: 23190 - 24494 (-)
Gene ID: Rep_3267_c_3_29
Type: sulfatase
Location: 24845 - 25609 (+)
Gene ID: Rep_3267_c_3_30
Type: TC
Location: 25770 - 27050 (+)
Gene ID: Rep_3267_c_3_31
Type: TC
Location: 27214 - 27918 (+)
Gene ID: Rep_3267_c_3_32
Type: pfam
Location: 27944 - 31399 (+)
Gene ID: Rep_3267_c_3_33
Type: pfam
Location: 31503 - 31865 (+)
Gene ID: Rep_3267_c_3_34
Type: TC
Location: 32059 - 34530 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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