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Cluster: Rep_3256_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3256_c_24 Rep_3256_c_24_1 3 377 + 2.A.19.5.2
STP Rep_3256_c_24 Rep_3256_c_24_2 435 1055 - NUDIX
pfam Rep_3256_c_24 Rep_3256_c_24_3 1052 1945 - DAGK_cat | YegS_C
TC Rep_3256_c_24 Rep_3256_c_24_4 2107 3357 + 2.A.86.1.8
TC Rep_3256_c_24 Rep_3256_c_24_5 3544 5070 + 3.A.1.5.27
TC Rep_3256_c_24 Rep_3256_c_24_6 5122 6072 + 3.A.1.5.32
TC Rep_3256_c_24 Rep_3256_c_24_7 6069 6875 + 3.A.1.5.27
TC Rep_3256_c_24 Rep_3256_c_24_8 6877 7668 + 3.A.1.5.27
TC Rep_3256_c_24 Rep_3256_c_24_9 7665 8405 + 3.A.1.5.10
pfam Rep_3256_c_24 Rep_3256_c_24_10 8410 9513 + DUF3810
CAZyme Rep_3256_c_24 Rep_3256_c_24_11 9533 10354 + GT8
Gene ID: Rep_3256_c_24_1
Type: TC
Location: 3 - 377 (+)
Gene ID: Rep_3256_c_24_2
Type: STP
Location: 435 - 1055 (-)
Gene ID: Rep_3256_c_24_3
Type: pfam
Location: 1052 - 1945 (-)
Gene ID: Rep_3256_c_24_4
Type: TC
Location: 2107 - 3357 (+)
Gene ID: Rep_3256_c_24_5
Type: TC
Location: 3544 - 5070 (+)
Gene ID: Rep_3256_c_24_6
Type: TC
Location: 5122 - 6072 (+)
Gene ID: Rep_3256_c_24_7
Type: TC
Location: 6069 - 6875 (+)
Gene ID: Rep_3256_c_24_8
Type: TC
Location: 6877 - 7668 (+)
Gene ID: Rep_3256_c_24_9
Type: TC
Location: 7665 - 8405 (+)
Gene ID: Rep_3256_c_24_10
Type: pfam
Location: 8410 - 9513 (+)
Gene ID: Rep_3256_c_24_11
Type: CAZyme
Location: 9533 - 10354 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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