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Cluster: Rep_3251_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3251_c_0 Rep_3251_c_0_149 162193 163899 + 8.A.59.4.2
pfam Rep_3251_c_0 Rep_3251_c_0_150 163956 165845 - Sulfatase
TF Rep_3251_c_0 Rep_3251_c_0_151 166094 166636 + SpoVT_AbrB
TC Rep_3251_c_0 Rep_3251_c_0_152 166741 168078 + 2.A.25.1.3
TC Rep_3251_c_0 Rep_3251_c_0_153 168160 169329 + 9.B.10.1.1
pfam Rep_3251_c_0 Rep_3251_c_0_154 169352 170281 + cobW | DUF1980_C
TC Rep_3251_c_0 Rep_3251_c_0_155 170381 171607 - 2.A.23.1.5
pfam Rep_3251_c_0 Rep_3251_c_0_156 171789 172487 - Asp_Glu_race
TC Rep_3251_c_0 Rep_3251_c_0_157 172500 173321 - 2.A.102.3.1
CAZyme Rep_3251_c_0 Rep_3251_c_0_158 173700 175622 + CBM48 | GH13_9
pfam Rep_3251_c_0 Rep_3251_c_0_159 175619 176827 + NTP_transferase | Hexapep_GlmU
pfam Rep_3251_c_0 Rep_3251_c_0_160 176824 177936 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_3251_c_0 Rep_3251_c_0_161 178078 179856 + GT5
CAZyme Rep_3251_c_0 Rep_3251_c_0_162 179866 182292 + GT35
TF Rep_3251_c_0 Rep_3251_c_0_163 182389 182595 - HTH_3
TC Rep_3251_c_0 Rep_3251_c_0_164 182920 184077 + 3.A.18.1.1
TC Rep_3251_c_0 Rep_3251_c_0_165 184123 185253 - 3.A.1.1.26
CAZyme Rep_3251_c_0 Rep_3251_c_0_166 185448 186581 - CE9
pfam Rep_3251_c_0 Rep_3251_c_0_167 186572 187324 - Glucosamine_iso
pfam Rep_3251_c_0 Rep_3251_c_0_168 187366 188280 - DHDPS
TC Rep_3251_c_0 Rep_3251_c_0_169 188386 189270 - 3.A.1.1.34
TC Rep_3251_c_0 Rep_3251_c_0_170 189283 190203 - 3.A.1.1.28
Gene ID: Rep_3251_c_0_149
Type: TC
Location: 162193 - 163899 (+)
Gene ID: Rep_3251_c_0_150
Type: pfam
Location: 163956 - 165845 (-)
Gene ID: Rep_3251_c_0_151
Type: TF
Location: 166094 - 166636 (+)
Gene ID: Rep_3251_c_0_152
Type: TC
Location: 166741 - 168078 (+)
Gene ID: Rep_3251_c_0_153
Type: TC
Location: 168160 - 169329 (+)
Gene ID: Rep_3251_c_0_154
Type: pfam
Location: 169352 - 170281 (+)
Gene ID: Rep_3251_c_0_155
Type: TC
Location: 170381 - 171607 (-)
Gene ID: Rep_3251_c_0_156
Type: pfam
Location: 171789 - 172487 (-)
Gene ID: Rep_3251_c_0_157
Type: TC
Location: 172500 - 173321 (-)
Gene ID: Rep_3251_c_0_158
Type: CAZyme
Location: 173700 - 175622 (+)
Gene ID: Rep_3251_c_0_159
Type: pfam
Location: 175619 - 176827 (+)
Gene ID: Rep_3251_c_0_160
Type: pfam
Location: 176824 - 177936 (+)
Gene ID: Rep_3251_c_0_161
Type: CAZyme
Location: 178078 - 179856 (+)
Gene ID: Rep_3251_c_0_162
Type: CAZyme
Location: 179866 - 182292 (+)
Gene ID: Rep_3251_c_0_163
Type: TF
Location: 182389 - 182595 (-)
Gene ID: Rep_3251_c_0_164
Type: TC
Location: 182920 - 184077 (+)
Gene ID: Rep_3251_c_0_165
Type: TC
Location: 184123 - 185253 (-)
Gene ID: Rep_3251_c_0_166
Type: CAZyme
Location: 185448 - 186581 (-)
Gene ID: Rep_3251_c_0_167
Type: pfam
Location: 186572 - 187324 (-)
Gene ID: Rep_3251_c_0_168
Type: pfam
Location: 187366 - 188280 (-)
Gene ID: Rep_3251_c_0_169
Type: TC
Location: 188386 - 189270 (-)
Gene ID: Rep_3251_c_0_170
Type: TC
Location: 189283 - 190203 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3251_c_0_168 vegan > omnivore 1.11295 0.01057

🧭 Explore Read Mapping of CGC

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