Cluster: Rep_3236_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3236
- CGC Family ID: CGCFAM_00121
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3236_c_27 | Rep_3236_c_27_24 | 21705 | 22562 | - | 3.A.1.1.18 |
| TC | Rep_3236_c_27 | Rep_3236_c_27_25 | 22575 | 23501 | - | 3.A.1.1.21 |
| STP | Rep_3236_c_27 | Rep_3236_c_27_26 | 23614 | 24909 | - | SBP_bac_1 |
| TC | Rep_3236_c_27 | Rep_3236_c_27_27 | 25049 | 26749 | - | 8.A.59.2.1 |
| pfam | Rep_3236_c_27 | Rep_3236_c_27_28 | 26835 | 28247 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | Rep_3236_c_27 | Rep_3236_c_27_29 | 28249 | 29733 | - | GH94 |
Gene ID: Rep_3236_c_27_24
Type: TC
Location: 21705 - 22562 (-)
Type: TC
Location: 21705 - 22562 (-)
Gene ID: Rep_3236_c_27_25
Type: TC
Location: 22575 - 23501 (-)
Type: TC
Location: 22575 - 23501 (-)
Gene ID: Rep_3236_c_27_26
Type: STP
Location: 23614 - 24909 (-)
Type: STP
Location: 23614 - 24909 (-)
Gene ID: Rep_3236_c_27_27
Type: TC
Location: 25049 - 26749 (-)
Type: TC
Location: 25049 - 26749 (-)
Gene ID: Rep_3236_c_27_28
Type: pfam
Location: 26835 - 28247 (-)
Type: pfam
Location: 26835 - 28247 (-)
Gene ID: Rep_3236_c_27_29
Type: CAZyme
Location: 28249 - 29733 (-)
Type: CAZyme
Location: 28249 - 29733 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934565655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3236_c_27_28 | vegetarian > omnivore | 1.93711 | 0.00566 |