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Cluster: Rep_3236_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3236_c_27 Rep_3236_c_27_14 11879 13405 + 3.A.1.5.3
TC Rep_3236_c_27 Rep_3236_c_27_15 13481 14419 + 3.A.1.5.3
TC Rep_3236_c_27 Rep_3236_c_27_16 14416 15234 + 3.A.1.5.27
TC Rep_3236_c_27 Rep_3236_c_27_17 15231 16034 + 3.A.1.5.2
TC Rep_3236_c_27 Rep_3236_c_27_18 16031 16771 + 3.A.1.5.41
pfam Rep_3236_c_27 Rep_3236_c_27_19 16789 17523 + Ubie_methyltran | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme Rep_3236_c_27 Rep_3236_c_27_20 17598 18719 - CE9
Gene ID: Rep_3236_c_27_14
Type: TC
Location: 11879 - 13405 (+)
Gene ID: Rep_3236_c_27_15
Type: TC
Location: 13481 - 14419 (+)
Gene ID: Rep_3236_c_27_16
Type: TC
Location: 14416 - 15234 (+)
Gene ID: Rep_3236_c_27_17
Type: TC
Location: 15231 - 16034 (+)
Gene ID: Rep_3236_c_27_18
Type: TC
Location: 16031 - 16771 (+)
Gene ID: Rep_3236_c_27_19
Type: pfam
Location: 16789 - 17523 (+)
Gene ID: Rep_3236_c_27_20
Type: CAZyme
Location: 17598 - 18719 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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