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Cluster: Rep_3236_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3236_c_12 Rep_3236_c_12_17 16912 18474 - 2.A.1.2.88
pfam Rep_3236_c_12 Rep_3236_c_12_18 18477 19274 - Hydrolase | Hydrolase_like | Hydrolase_6 | HAD_2
TC Rep_3236_c_12 Rep_3236_c_12_19 19503 20516 + 9.A.11.1.1
pfam Rep_3236_c_12 Rep_3236_c_12_20 20527 20883 + SpoVAC_SpoVAEB
pfam Rep_3236_c_12 Rep_3236_c_12_21 20945 21241 + Trns_repr_metal
TC Rep_3236_c_12 Rep_3236_c_12_22 21254 23749 + 3.A.3.5.15
CAZyme Rep_3236_c_12 Rep_3236_c_12_23 23837 25486 + GH13_31
TF Rep_3236_c_12 Rep_3236_c_12_24 25693 26643 + HTH_3
TC Rep_3236_c_12 Rep_3236_c_12_25 26726 28453 - 2.A.114.1.3
Gene ID: Rep_3236_c_12_17
Type: TC
Location: 16912 - 18474 (-)
Gene ID: Rep_3236_c_12_18
Type: pfam
Location: 18477 - 19274 (-)
Gene ID: Rep_3236_c_12_19
Type: TC
Location: 19503 - 20516 (+)
Gene ID: Rep_3236_c_12_20
Type: pfam
Location: 20527 - 20883 (+)
Gene ID: Rep_3236_c_12_21
Type: pfam
Location: 20945 - 21241 (+)
Gene ID: Rep_3236_c_12_22
Type: TC
Location: 21254 - 23749 (+)
Gene ID: Rep_3236_c_12_23
Type: CAZyme
Location: 23837 - 25486 (+)
Gene ID: Rep_3236_c_12_24
Type: TF
Location: 25693 - 26643 (+)
Gene ID: Rep_3236_c_12_25
Type: TC
Location: 26726 - 28453 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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