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Cluster: Rep_3232_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3232_c_10 Rep_3232_c_10_5 4280 6145 - 1.C.39.4.5
STP Rep_3232_c_10 Rep_3232_c_10_6 6688 7815 + HATPase_c | HisKA
TF Rep_3232_c_10 Rep_3232_c_10_7 7805 8512 + Trans_reg_C
TC Rep_3232_c_10 Rep_3232_c_10_8 8764 10197 + 2.A.22.5.3
TC Rep_3232_c_10 Rep_3232_c_10_9 10458 12197 + 2.A.35.2.1
TC Rep_3232_c_10 Rep_3232_c_10_10 12528 14267 + 2.A.35.2.1
TC Rep_3232_c_10 Rep_3232_c_10_11 14682 16421 + 2.A.35.2.1
pfam Rep_3232_c_10 Rep_3232_c_10_12 16759 17778 - ATPgrasp_ST
TF Rep_3232_c_10 Rep_3232_c_10_13 17989 18348 + GntR
TC Rep_3232_c_10 Rep_3232_c_10_14 18348 19244 + 3.A.1.105.1
NULL(UNKNOWN) Rep_3232_c_10 Rep_3232_c_10_15 19219 21126 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3232_c_10 Rep_3232_c_10_16 21736 22980 + GT2
TC Rep_3232_c_10 Rep_3232_c_10_17 23448 24212 + 3.A.1.134.4
TC Rep_3232_c_10 Rep_3232_c_10_18 24209 25840 + 3.A.1.134.9
Gene ID: Rep_3232_c_10_5
Type: TC
Location: 4280 - 6145 (-)
Gene ID: Rep_3232_c_10_6
Type: STP
Location: 6688 - 7815 (+)
Gene ID: Rep_3232_c_10_7
Type: TF
Location: 7805 - 8512 (+)
Gene ID: Rep_3232_c_10_8
Type: TC
Location: 8764 - 10197 (+)
Gene ID: Rep_3232_c_10_9
Type: TC
Location: 10458 - 12197 (+)
Gene ID: Rep_3232_c_10_10
Type: TC
Location: 12528 - 14267 (+)
Gene ID: Rep_3232_c_10_11
Type: TC
Location: 14682 - 16421 (+)
Gene ID: Rep_3232_c_10_12
Type: pfam
Location: 16759 - 17778 (-)
Gene ID: Rep_3232_c_10_13
Type: TF
Location: 17989 - 18348 (+)
Gene ID: Rep_3232_c_10_14
Type: TC
Location: 18348 - 19244 (+)
Gene ID: Rep_3232_c_10_15
Type:
Location: 19219 - 21126 (+)
Gene ID: Rep_3232_c_10_16
Type: CAZyme
Location: 21736 - 22980 (+)
Gene ID: Rep_3232_c_10_17
Type: TC
Location: 23448 - 24212 (+)
Gene ID: Rep_3232_c_10_18
Type: TC
Location: 24209 - 25840 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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