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Cluster: Rep_3232_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3232_c_6 Rep_3232_c_6_42 40332 40979 - 2.A.38.4.4
TC Rep_3232_c_6 Rep_3232_c_6_43 40992 42332 - 2.A.38.4.3
NULL(UNKNOWN) Rep_3232_c_6 Rep_3232_c_6_44 42584 42922 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3232_c_6 Rep_3232_c_6_45 42919 43437 - DUF6282
CAZyme Rep_3232_c_6 Rep_3232_c_6_46 43679 44497 + GT8
NULL(UNKNOWN) Rep_3232_c_6 Rep_3232_c_6_47 44546 44779 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3232_c_6 Rep_3232_c_6_48 44963 45415 + Rrf2
TC Rep_3232_c_6 Rep_3232_c_6_49 45417 46163 + 3.A.1.3.2
Gene ID: Rep_3232_c_6_42
Type: TC
Location: 40332 - 40979 (-)
Gene ID: Rep_3232_c_6_43
Type: TC
Location: 40992 - 42332 (-)
Gene ID: Rep_3232_c_6_44
Type:
Location: 42584 - 42922 (+)
Gene ID: Rep_3232_c_6_45
Type: pfam
Location: 42919 - 43437 (-)
Gene ID: Rep_3232_c_6_46
Type: CAZyme
Location: 43679 - 44497 (+)
Gene ID: Rep_3232_c_6_47
Type:
Location: 44546 - 44779 (-)
Gene ID: Rep_3232_c_6_48
Type: TF
Location: 44963 - 45415 (+)
Gene ID: Rep_3232_c_6_49
Type: TC
Location: 45417 - 46163 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3232_c_6_46 vegetarian > vegan 1.21661 0.00566
Rep_3232_c_6_48 vegetarian > vegan 1.18090 0.00566

🧭 Explore Read Mapping of CGC

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