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Cluster: Rep_3232_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3232_c_5 Rep_3232_c_5_38 36871 37551 + 3.A.1.122.2
pfam Rep_3232_c_5 Rep_3232_c_5_39 37544 39292 + Biotin_lipoyl_2
TC Rep_3232_c_5 Rep_3232_c_5_40 39305 40552 + 3.A.1.122.2
CAZyme Rep_3232_c_5 Rep_3232_c_5_41 40875 42746 + GH13_9
pfam Rep_3232_c_5 Rep_3232_c_5_42 42780 43994 + NTP_transferase | Hexapep_GlmU
pfam Rep_3232_c_5 Rep_3232_c_5_43 43991 45103 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_3232_c_5 Rep_3232_c_5_44 45321 46748 + GT5
CAZyme Rep_3232_c_5 Rep_3232_c_5_45 46763 49183 + GT35
Gene ID: Rep_3232_c_5_38
Type: TC
Location: 36871 - 37551 (+)
Gene ID: Rep_3232_c_5_39
Type: pfam
Location: 37544 - 39292 (+)
Gene ID: Rep_3232_c_5_40
Type: TC
Location: 39305 - 40552 (+)
Gene ID: Rep_3232_c_5_41
Type: CAZyme
Location: 40875 - 42746 (+)
Gene ID: Rep_3232_c_5_42
Type: pfam
Location: 42780 - 43994 (+)
Gene ID: Rep_3232_c_5_43
Type: pfam
Location: 43991 - 45103 (+)
Gene ID: Rep_3232_c_5_44
Type: CAZyme
Location: 45321 - 46748 (+)
Gene ID: Rep_3232_c_5_45
Type: CAZyme
Location: 46763 - 49183 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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