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Cluster: Rep_3208_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3208_c_2 Rep_3208_c_2_11 9544 10890 - 2.A.23.1.5
NULL(UNKNOWN) Rep_3208_c_2 Rep_3208_c_2_12 11110 12315 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3208_c_2 Rep_3208_c_2_13 12319 12564 - PP-binding
TC Rep_3208_c_2 Rep_3208_c_2_14 12645 14117 - 4.C.1.1.6
TC Rep_3208_c_2 Rep_3208_c_2_15 14256 15737 - 4.C.1.1.6
pfam Rep_3208_c_2 Rep_3208_c_2_16 16177 17310 + Acyl_transf_3
NULL(UNKNOWN) Rep_3208_c_2 Rep_3208_c_2_17 17427 18248 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3208_c_2 Rep_3208_c_2_18 18274 19872 + GT4
Gene ID: Rep_3208_c_2_11
Type: TC
Location: 9544 - 10890 (-)
Gene ID: Rep_3208_c_2_12
Type:
Location: 11110 - 12315 (-)
Gene ID: Rep_3208_c_2_13
Type: pfam
Location: 12319 - 12564 (-)
Gene ID: Rep_3208_c_2_14
Type: TC
Location: 12645 - 14117 (-)
Gene ID: Rep_3208_c_2_15
Type: TC
Location: 14256 - 15737 (-)
Gene ID: Rep_3208_c_2_16
Type: pfam
Location: 16177 - 17310 (+)
Gene ID: Rep_3208_c_2_17
Type:
Location: 17427 - 18248 (+)
Gene ID: Rep_3208_c_2_18
Type: CAZyme
Location: 18274 - 19872 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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