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Cluster: Rep_3208_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3208_c_0 Rep_3208_c_0_37 41530 43098 - GH51_1
NULL(UNKNOWN) Rep_3208_c_0 Rep_3208_c_0_38 43137 43472 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3208_c_0 Rep_3208_c_0_39 43765 45333 - GH51_1
pfam Rep_3208_c_0 Rep_3208_c_0_40 45372 46379 - BPD_transp_2
pfam Rep_3208_c_0 Rep_3208_c_0_41 46443 47615 - Peripla_BP_4
TC Rep_3208_c_0 Rep_3208_c_0_42 47675 48676 - 3.A.1.2.27
TC Rep_3208_c_0 Rep_3208_c_0_43 48660 50195 - 3.A.1.2.19
TF Rep_3208_c_0 Rep_3208_c_0_44 50513 51565 + GntR
STP Rep_3208_c_0 Rep_3208_c_0_45 51797 53440 - Pyr_redox
TC Rep_3208_c_0 Rep_3208_c_0_46 53928 55574 + 3.A.1.5.28
TC Rep_3208_c_0 Rep_3208_c_0_47 55640 56602 + 3.A.1.5.20
TC Rep_3208_c_0 Rep_3208_c_0_48 56599 57417 + 3.A.1.5.20
TC Rep_3208_c_0 Rep_3208_c_0_49 57422 58405 + 3.A.1.5.2
TC Rep_3208_c_0 Rep_3208_c_0_50 58402 59355 + 3.A.1.5.20
Gene ID: Rep_3208_c_0_37
Type: CAZyme
Location: 41530 - 43098 (-)
Gene ID: Rep_3208_c_0_38
Type:
Location: 43137 - 43472 (-)
Gene ID: Rep_3208_c_0_39
Type: CAZyme
Location: 43765 - 45333 (-)
Gene ID: Rep_3208_c_0_40
Type: pfam
Location: 45372 - 46379 (-)
Gene ID: Rep_3208_c_0_41
Type: pfam
Location: 46443 - 47615 (-)
Gene ID: Rep_3208_c_0_42
Type: TC
Location: 47675 - 48676 (-)
Gene ID: Rep_3208_c_0_43
Type: TC
Location: 48660 - 50195 (-)
Gene ID: Rep_3208_c_0_44
Type: TF
Location: 50513 - 51565 (+)
Gene ID: Rep_3208_c_0_45
Type: STP
Location: 51797 - 53440 (-)
Gene ID: Rep_3208_c_0_46
Type: TC
Location: 53928 - 55574 (+)
Gene ID: Rep_3208_c_0_47
Type: TC
Location: 55640 - 56602 (+)
Gene ID: Rep_3208_c_0_48
Type: TC
Location: 56599 - 57417 (+)
Gene ID: Rep_3208_c_0_49
Type: TC
Location: 57422 - 58405 (+)
Gene ID: Rep_3208_c_0_50
Type: TC
Location: 58402 - 59355 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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