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Cluster: Rep_3208_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3208_c_31 Rep_3208_c_31_1 3 857 - 3.A.1.5.35
TC Rep_3208_c_31 Rep_3208_c_31_2 857 1873 - 3.A.1.5.2
TC Rep_3208_c_31 Rep_3208_c_31_3 1887 2843 - 3.A.1.5.2
TC Rep_3208_c_31 Rep_3208_c_31_4 2858 3781 - 3.A.1.5.2
peptidase Rep_3208_c_31 Rep_3208_c_31_5 4279 5364 + M42.UPW
peptidase Rep_3208_c_31 Rep_3208_c_31_6 5382 6791 + M20.UPA
CAZyme Rep_3208_c_31 Rep_3208_c_31_7 6950 7711 - CE4
TF Rep_3208_c_31 Rep_3208_c_31_8 7868 8854 + HTH_11
TC Rep_3208_c_31 Rep_3208_c_31_9 8907 9449 + 2.A.51.1.6
TC Rep_3208_c_31 Rep_3208_c_31_10 9446 10045 + 2.A.51.1.6
Gene ID: Rep_3208_c_31_1
Type: TC
Location: 3 - 857 (-)
Gene ID: Rep_3208_c_31_2
Type: TC
Location: 857 - 1873 (-)
Gene ID: Rep_3208_c_31_3
Type: TC
Location: 1887 - 2843 (-)
Gene ID: Rep_3208_c_31_4
Type: TC
Location: 2858 - 3781 (-)
Gene ID: Rep_3208_c_31_5
Type: peptidase
Location: 4279 - 5364 (+)
Gene ID: Rep_3208_c_31_6
Type: peptidase
Location: 5382 - 6791 (+)
Gene ID: Rep_3208_c_31_7
Type: CAZyme
Location: 6950 - 7711 (-)
Gene ID: Rep_3208_c_31_8
Type: TF
Location: 7868 - 8854 (+)
Gene ID: Rep_3208_c_31_9
Type: TC
Location: 8907 - 9449 (+)
Gene ID: Rep_3208_c_31_10
Type: TC
Location: 9446 - 10045 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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