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Cluster: Rep_3208_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3208_c_23 Rep_3208_c_23_9 7044 8147 - GH53
NULL(UNKNOWN) Rep_3208_c_23 Rep_3208_c_23_10 8228 8452 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_3208_c_23 Rep_3208_c_23_11 8425 10308 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3208_c_23 Rep_3208_c_23_12 10344 11183 - 3.A.1.1.27
TC Rep_3208_c_23 Rep_3208_c_23_13 11180 12649 - 3.A.1.1.27
STP Rep_3208_c_23 Rep_3208_c_23_14 12792 14126 - SBP_bac_1
TF Rep_3208_c_23 Rep_3208_c_23_15 14372 15385 - LacI
CAZyme Rep_3208_c_23 Rep_3208_c_23_16 15521 17482 + GH42
Gene ID: Rep_3208_c_23_9
Type: CAZyme
Location: 7044 - 8147 (-)
Gene ID: Rep_3208_c_23_10
Type:
Location: 8228 - 8452 (-)
Gene ID: Rep_3208_c_23_11
Type:
Location: 8425 - 10308 (-)
Gene ID: Rep_3208_c_23_12
Type: TC
Location: 10344 - 11183 (-)
Gene ID: Rep_3208_c_23_13
Type: TC
Location: 11180 - 12649 (-)
Gene ID: Rep_3208_c_23_14
Type: STP
Location: 12792 - 14126 (-)
Gene ID: Rep_3208_c_23_15
Type: TF
Location: 14372 - 15385 (-)
Gene ID: Rep_3208_c_23_16
Type: CAZyme
Location: 15521 - 17482 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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