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Cluster: Rep_3208_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3208_c_22 Rep_3208_c_22_23 25207 26373 - 2.A.4.7.6
NULL(UNKNOWN) Rep_3208_c_22 Rep_3208_c_22_24 26403 27002 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3208_c_22 Rep_3208_c_22_25 27182 28192 + 9.A.11.1.1
pfam Rep_3208_c_22 Rep_3208_c_22_26 28230 28586 + SpoVAC_SpoVAEB
CAZyme Rep_3208_c_22 Rep_3208_c_22_27 28786 30069 + GH1
CAZyme Rep_3208_c_22 Rep_3208_c_22_28 30112 31713 + GH13_31
TC Rep_3208_c_22 Rep_3208_c_22_29 31742 33109 + 2.A.2.2.1
TF Rep_3208_c_22 Rep_3208_c_22_30 33204 34025 - HTH_3
STP Rep_3208_c_22 Rep_3208_c_22_31 34188 34358 - Fer4 | Fer4
TC Rep_3208_c_22 Rep_3208_c_22_32 34446 36065 + 3.A.9.1.2
Gene ID: Rep_3208_c_22_23
Type: TC
Location: 25207 - 26373 (-)
Gene ID: Rep_3208_c_22_24
Type:
Location: 26403 - 27002 (-)
Gene ID: Rep_3208_c_22_25
Type: TC
Location: 27182 - 28192 (+)
Gene ID: Rep_3208_c_22_26
Type: pfam
Location: 28230 - 28586 (+)
Gene ID: Rep_3208_c_22_27
Type: CAZyme
Location: 28786 - 30069 (+)
Gene ID: Rep_3208_c_22_28
Type: CAZyme
Location: 30112 - 31713 (+)
Gene ID: Rep_3208_c_22_29
Type: TC
Location: 31742 - 33109 (+)
Gene ID: Rep_3208_c_22_30
Type: TF
Location: 33204 - 34025 (-)
Gene ID: Rep_3208_c_22_31
Type: STP
Location: 34188 - 34358 (-)
Gene ID: Rep_3208_c_22_32
Type: TC
Location: 34446 - 36065 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3208_c_22_26 vegetarian > vegan 2.81748 0.02258

🧭 Explore Read Mapping of CGC

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