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Cluster: Rep_3208_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3208_c_19 Rep_3208_c_19_7 7813 9183 + 3.D.6.1.2
TC Rep_3208_c_19 Rep_3208_c_19_8 9186 10202 + 3.D.6.1.2
pfam Rep_3208_c_19 Rep_3208_c_19_9 10199 10801 + FMN_bind
TC Rep_3208_c_19 Rep_3208_c_19_10 10816 11415 + 3.D.6.1.2
TC Rep_3208_c_19 Rep_3208_c_19_11 11419 12003 + 3.D.6.1.2
TC Rep_3208_c_19 Rep_3208_c_19_12 12020 12850 + 3.D.6.1.3
CAZyme Rep_3208_c_19 Rep_3208_c_19_13 12942 13547 - CBM50
Gene ID: Rep_3208_c_19_7
Type: TC
Location: 7813 - 9183 (+)
Gene ID: Rep_3208_c_19_8
Type: TC
Location: 9186 - 10202 (+)
Gene ID: Rep_3208_c_19_9
Type: pfam
Location: 10199 - 10801 (+)
Gene ID: Rep_3208_c_19_10
Type: TC
Location: 10816 - 11415 (+)
Gene ID: Rep_3208_c_19_11
Type: TC
Location: 11419 - 12003 (+)
Gene ID: Rep_3208_c_19_12
Type: TC
Location: 12020 - 12850 (+)
Gene ID: Rep_3208_c_19_13
Type: CAZyme
Location: 12942 - 13547 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3208_c_19_7 vegetarian > vegan 1.08658 0.02258
Rep_3208_c_19_8 vegetarian > vegan 1.07084 0.02258

🧭 Explore Read Mapping of CGC

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