dbCAN Logo

Cluster: Rep_3208_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3208_c_18 Rep_3208_c_18_12 10478 11419 - CE7
TF Rep_3208_c_18 Rep_3208_c_18_13 11559 12449 + HTH_AraC | HTH_AraC
STP Rep_3208_c_18 Rep_3208_c_18_14 12607 13989 + SBP_bac_1
TC Rep_3208_c_18 Rep_3208_c_18_15 14090 14980 + 3.A.1.1.44
TC Rep_3208_c_18 Rep_3208_c_18_16 14980 15825 + 3.A.1.1.41
CAZyme Rep_3208_c_18 Rep_3208_c_18_17 15854 16978 + GH177
pfam Rep_3208_c_18 Rep_3208_c_18_18 16971 17876 + DHDPS
pfam Rep_3208_c_18 Rep_3208_c_18_19 17904 18158 + PAP2
TC Rep_3208_c_18 Rep_3208_c_18_20 18179 18784 - 2.A.115.2.14
Gene ID: Rep_3208_c_18_12
Type: CAZyme
Location: 10478 - 11419 (-)
Gene ID: Rep_3208_c_18_13
Type: TF
Location: 11559 - 12449 (+)
Gene ID: Rep_3208_c_18_14
Type: STP
Location: 12607 - 13989 (+)
Gene ID: Rep_3208_c_18_15
Type: TC
Location: 14090 - 14980 (+)
Gene ID: Rep_3208_c_18_16
Type: TC
Location: 14980 - 15825 (+)
Gene ID: Rep_3208_c_18_17
Type: CAZyme
Location: 15854 - 16978 (+)
Gene ID: Rep_3208_c_18_18
Type: pfam
Location: 16971 - 17876 (+)
Gene ID: Rep_3208_c_18_19
Type: pfam
Location: 17904 - 18158 (+)
Gene ID: Rep_3208_c_18_20
Type: TC
Location: 18179 - 18784 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List