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Cluster: Rep_3208_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3208_c_0 Rep_3208_c_0_12 12325 14043 + 3.A.1.5.28
TC Rep_3208_c_0 Rep_3208_c_0_13 14175 15143 + 3.A.1.5.20
TC Rep_3208_c_0 Rep_3208_c_0_14 15156 16094 + 3.A.1.5.20
TC Rep_3208_c_0 Rep_3208_c_0_15 16109 17158 + 3.A.1.5.12
TC Rep_3208_c_0 Rep_3208_c_0_16 17168 18205 + 3.A.1.5.29
TC Rep_3208_c_0 Rep_3208_c_0_17 18230 19837 + 3.D.10.1.4
CAZyme Rep_3208_c_0 Rep_3208_c_0_18 19842 20816 + CE7
CAZyme Rep_3208_c_0 Rep_3208_c_0_19 20813 21691 + CE7
CAZyme Rep_3208_c_0 Rep_3208_c_0_20 21709 22809 + GH177
Gene ID: Rep_3208_c_0_12
Type: TC
Location: 12325 - 14043 (+)
Gene ID: Rep_3208_c_0_13
Type: TC
Location: 14175 - 15143 (+)
Gene ID: Rep_3208_c_0_14
Type: TC
Location: 15156 - 16094 (+)
Gene ID: Rep_3208_c_0_15
Type: TC
Location: 16109 - 17158 (+)
Gene ID: Rep_3208_c_0_16
Type: TC
Location: 17168 - 18205 (+)
Gene ID: Rep_3208_c_0_17
Type: TC
Location: 18230 - 19837 (+)
Gene ID: Rep_3208_c_0_18
Type: CAZyme
Location: 19842 - 20816 (+)
Gene ID: Rep_3208_c_0_19
Type: CAZyme
Location: 20813 - 21691 (+)
Gene ID: Rep_3208_c_0_20
Type: CAZyme
Location: 21709 - 22809 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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