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Cluster: Rep_3191_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3191_c_1 Rep_3191_c_1_158 171820 173358 + 3.A.1.2.12
TC Rep_3191_c_1 Rep_3191_c_1_159 173361 174602 + 3.A.1.2.12
TC Rep_3191_c_1 Rep_3191_c_1_160 174599 175630 + 3.A.1.2.17
pfam Rep_3191_c_1 Rep_3191_c_1_161 175760 176632 + Ubie_methyltran | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
pfam Rep_3191_c_1 Rep_3191_c_1_162 176748 177830 - Asn_synthase | NAD_synthase | tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
CAZyme Rep_3191_c_1 Rep_3191_c_1_163 178111 179853 + GH24
Gene ID: Rep_3191_c_1_158
Type: TC
Location: 171820 - 173358 (+)
Gene ID: Rep_3191_c_1_159
Type: TC
Location: 173361 - 174602 (+)
Gene ID: Rep_3191_c_1_160
Type: TC
Location: 174599 - 175630 (+)
Gene ID: Rep_3191_c_1_161
Type: pfam
Location: 175760 - 176632 (+)
Gene ID: Rep_3191_c_1_162
Type: pfam
Location: 176748 - 177830 (-)
Gene ID: Rep_3191_c_1_163
Type: CAZyme
Location: 178111 - 179853 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3191_c_1_159 vegetarian > vegan 1.12679 0.00364

🧭 Explore Read Mapping of CGC

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