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Cluster: Rep_3191_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3191_c_0 Rep_3191_c_0_1467 1627743 1628606 - 3.A.1.1.20
TC Rep_3191_c_0 Rep_3191_c_0_1468 1628616 1629509 - 3.A.1.1.34
TC Rep_3191_c_0 Rep_3191_c_0_1469 1629511 1630614 - 3.A.1.1.38
pfam Rep_3191_c_0 Rep_3191_c_0_1470 1631008 1631817 + SpoU_methylase
CAZyme Rep_3191_c_0 Rep_3191_c_0_1471 1632073 1633092 - GT2
CAZyme Rep_3191_c_0 Rep_3191_c_0_1472 1633097 1634191 - GT2
CAZyme Rep_3191_c_0 Rep_3191_c_0_1473 1634188 1635267 - GT4
CAZyme Rep_3191_c_0 Rep_3191_c_0_1474 1635264 1636334 - GT4
STP Rep_3191_c_0 Rep_3191_c_0_1475 1636442 1637068 - TetR_N
TC Rep_3191_c_0 Rep_3191_c_0_1476 1637187 1637729 - 3.A.1.25.5
Gene ID: Rep_3191_c_0_1467
Type: TC
Location: 1627743 - 1628606 (-)
Gene ID: Rep_3191_c_0_1468
Type: TC
Location: 1628616 - 1629509 (-)
Gene ID: Rep_3191_c_0_1469
Type: TC
Location: 1629511 - 1630614 (-)
Gene ID: Rep_3191_c_0_1470
Type: pfam
Location: 1631008 - 1631817 (+)
Gene ID: Rep_3191_c_0_1471
Type: CAZyme
Location: 1632073 - 1633092 (-)
Gene ID: Rep_3191_c_0_1472
Type: CAZyme
Location: 1633097 - 1634191 (-)
Gene ID: Rep_3191_c_0_1473
Type: CAZyme
Location: 1634188 - 1635267 (-)
Gene ID: Rep_3191_c_0_1474
Type: CAZyme
Location: 1635264 - 1636334 (-)
Gene ID: Rep_3191_c_0_1475
Type: STP
Location: 1636442 - 1637068 (-)
Gene ID: Rep_3191_c_0_1476
Type: TC
Location: 1637187 - 1637729 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3191_c_0_1467 vegetarian > omnivore 1.23189 0.00861

🧭 Explore Read Mapping of CGC

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