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Cluster: Rep_3191_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3191_c_0 Rep_3191_c_0_1213 1343649 1345814 - GH112
TC Rep_3191_c_0 Rep_3191_c_0_1214 1345870 1346727 - 3.A.1.1.18
TC Rep_3191_c_0 Rep_3191_c_0_1215 1346743 1347636 - 3.A.1.1.18
NULL(UNKNOWN) Rep_3191_c_0 Rep_3191_c_0_1216 1347854 1349152 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3191_c_0 Rep_3191_c_0_1217 1349454 1350296 + HTH_AraC | HTH_AraC
TC Rep_3191_c_0 Rep_3191_c_0_1218 1350479 1352188 - 3.A.7.14.1
Gene ID: Rep_3191_c_0_1213
Type: CAZyme
Location: 1343649 - 1345814 (-)
Gene ID: Rep_3191_c_0_1214
Type: TC
Location: 1345870 - 1346727 (-)
Gene ID: Rep_3191_c_0_1215
Type: TC
Location: 1346743 - 1347636 (-)
Gene ID: Rep_3191_c_0_1216
Type:
Location: 1347854 - 1349152 (-)
Gene ID: Rep_3191_c_0_1217
Type: TF
Location: 1349454 - 1350296 (+)
Gene ID: Rep_3191_c_0_1218
Type: TC
Location: 1350479 - 1352188 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3191_c_0_1214 vegan > omnivore 1.92797 0.02242
Rep_3191_c_0_1214 vegetarian > omnivore 2.16990 0.00861
Rep_3191_c_0_1215 vegan > omnivore 2.83334 0.02242
Rep_3191_c_0_1215 vegetarian > omnivore 1.29586 0.00861
Rep_3191_c_0_1216 vegan > omnivore 2.27084 0.03445

🧭 Explore Read Mapping of CGC

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