dbCAN HGM

Cluster: Rep_3176_CGC2

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_3176_c_13	Rep_3176_c_13_4	2565	3386	-	3.D.6.1.2
TC	Rep_3176_c_13	Rep_3176_c_13_5	3400	3993	-	3.D.6.1.2
TC	Rep_3176_c_13	Rep_3176_c_13_6	3997	4680	-	3.D.6.1.2
TC	Rep_3176_c_13	Rep_3176_c_13_7	4694	5263	-	3.D.6.1.3
TC	Rep_3176_c_13	Rep_3176_c_13_8	5256	6299	-	3.D.6.1.2
TC	Rep_3176_c_13	Rep_3176_c_13_9	6296	7648	-	3.D.6.1.2
TC	Rep_3176_c_13	Rep_3176_c_13_10	7977	9257	+	2.A.1.84.3
CAZyme	Rep_3176_c_13	Rep_3176_c_13_11	9251	10951	+	GH2

Gene ID: Rep_3176_c_13_4
Type: TC
Location: 2565 - 3386 (-)

Gene ID: Rep_3176_c_13_5
Type: TC
Location: 3400 - 3993 (-)

Gene ID: Rep_3176_c_13_6
Type: TC
Location: 3997 - 4680 (-)

Gene ID: Rep_3176_c_13_7
Type: TC
Location: 4694 - 5263 (-)

Gene ID: Rep_3176_c_13_8
Type: TC
Location: 5256 - 6299 (-)

Gene ID: Rep_3176_c_13_9
Type: TC
Location: 6296 - 7648 (-)

Gene ID: Rep_3176_c_13_10
Type: TC
Location: 7977 - 9257 (+)

Gene ID: Rep_3176_c_13_11
Type: CAZyme
Location: 9251 - 10951 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_3176_c_13_4	vegetarian > omnivore	1.21118	0.00082
Rep_3176_c_13_7	vegetarian > omnivore	1.41929	0.00082
Rep_3176_c_13_8	vegetarian > omnivore	1.30518	0.00082
Rep_3176_c_13_9	vegetarian > omnivore	1.21012	0.00082

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_3176_c_13_5	UC > CD	1.40533	0.03476