Cluster: Rep_3176_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3176
- CGC Family ID: CGCFAM_10244
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3176_c_112 | Rep_3176_c_112_1 | 159 | 1433 | - | CBM50 |
| peptidase | Rep_3176_c_112 | Rep_3176_c_112_2 | 1569 | 2585 | + | S55.001 |
| STP | Rep_3176_c_112 | Rep_3176_c_112_3 | 3123 | 4817 | - | Fer4 | Fer4 |
| TC | Rep_3176_c_112 | Rep_3176_c_112_4 | 4821 | 6707 | - | 3.D.1.5.1 |
| TC | Rep_3176_c_112 | Rep_3176_c_112_5 | 6711 | 7187 | - | 3.D.1.5.1 |
| pfam | Rep_3176_c_112 | Rep_3176_c_112_6 | 7600 | 7863 | + | TM1266-like |
| pfam | Rep_3176_c_112 | Rep_3176_c_112_7 | 7892 | 8917 | + | NMT1 | Phosphonate-bd |
| TC | Rep_3176_c_112 | Rep_3176_c_112_8 | 8914 | 9684 | + | 3.A.1.17.5 |
| TC | Rep_3176_c_112 | Rep_3176_c_112_9 | 9677 | 10264 | + | 3.A.1.17.12 |
Gene ID: Rep_3176_c_112_1
Type: CAZyme
Location: 159 - 1433 (-)
Type: CAZyme
Location: 159 - 1433 (-)
Gene ID: Rep_3176_c_112_2
Type: peptidase
Location: 1569 - 2585 (+)
Type: peptidase
Location: 1569 - 2585 (+)
Gene ID: Rep_3176_c_112_3
Type: STP
Location: 3123 - 4817 (-)
Type: STP
Location: 3123 - 4817 (-)
Gene ID: Rep_3176_c_112_4
Type: TC
Location: 4821 - 6707 (-)
Type: TC
Location: 4821 - 6707 (-)
Gene ID: Rep_3176_c_112_5
Type: TC
Location: 6711 - 7187 (-)
Type: TC
Location: 6711 - 7187 (-)
Gene ID: Rep_3176_c_112_6
Type: pfam
Location: 7600 - 7863 (+)
Type: pfam
Location: 7600 - 7863 (+)
Gene ID: Rep_3176_c_112_7
Type: pfam
Location: 7892 - 8917 (+)
Type: pfam
Location: 7892 - 8917 (+)
Gene ID: Rep_3176_c_112_8
Type: TC
Location: 8914 - 9684 (+)
Type: TC
Location: 8914 - 9684 (+)
Gene ID: Rep_3176_c_112_9
Type: TC
Location: 9677 - 10264 (+)
Type: TC
Location: 9677 - 10264 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Species
CAG-103 sp018265835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3176_c_112_3 | vegetarian > omnivore | 1.11931 | 0.00082 |
| Rep_3176_c_112_5 | vegetarian > omnivore | 1.88503 | 0.00082 |
| Rep_3176_c_112_5 | vegetarian > vegan | 1.10882 | 0.00272 |
| Rep_3176_c_112_7 | vegetarian > omnivore | 1.41592 | 0.00082 |
| Rep_3176_c_112_7 | vegetarian > vegan | 1.00301 | 0.00272 |
| Rep_3176_c_112_9 | vegetarian > omnivore | 2.02366 | 0.00082 |
| Rep_3176_c_112_9 | vegetarian > vegan | 1.79251 | 0.00272 |