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Cluster: Rep_3176_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3176_c_96 Rep_3176_c_96_1 150 1433 + GT2
TF Rep_3176_c_96 Rep_3176_c_96_2 1512 2204 + Trans_reg_C
STP Rep_3176_c_96 Rep_3176_c_96_3 2201 4243 + HATPase_c | HisKA
TC Rep_3176_c_96 Rep_3176_c_96_4 4455 5750 + 2.A.26.1.5
TF Rep_3176_c_96 Rep_3176_c_96_5 5819 6523 - Trans_reg_C
STP Rep_3176_c_96 Rep_3176_c_96_6 6520 7590 - HATPase_c | HisKA
TC Rep_3176_c_96 Rep_3176_c_96_7 8074 8751 + 9.B.18.1.3
TF Rep_3176_c_96 Rep_3176_c_96_8 8796 9653 - HTH_1
TC Rep_3176_c_96 Rep_3176_c_96_9 9847 11214 + 2.A.22.5.3
Gene ID: Rep_3176_c_96_1
Type: CAZyme
Location: 150 - 1433 (+)
Gene ID: Rep_3176_c_96_2
Type: TF
Location: 1512 - 2204 (+)
Gene ID: Rep_3176_c_96_3
Type: STP
Location: 2201 - 4243 (+)
Gene ID: Rep_3176_c_96_4
Type: TC
Location: 4455 - 5750 (+)
Gene ID: Rep_3176_c_96_5
Type: TF
Location: 5819 - 6523 (-)
Gene ID: Rep_3176_c_96_6
Type: STP
Location: 6520 - 7590 (-)
Gene ID: Rep_3176_c_96_7
Type: TC
Location: 8074 - 8751 (+)
Gene ID: Rep_3176_c_96_8
Type: TF
Location: 8796 - 9653 (-)
Gene ID: Rep_3176_c_96_9
Type: TC
Location: 9847 - 11214 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3176_c_96_5 vegetarian > omnivore 1.32090 0.00082

🧭 Explore Read Mapping of CGC

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