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Cluster: Rep_3176_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3176_c_94 Rep_3176_c_94_35 44182 47106 - 3.A.1.122.13
TC Rep_3176_c_94 Rep_3176_c_94_36 47381 48739 + 2.A.38.1.1
pfam Rep_3176_c_94 Rep_3176_c_94_37 48821 49762 - Mem_trans | Mem_trans
TC Rep_3176_c_94 Rep_3176_c_94_38 49851 50789 - 2.A.19.5.1
CAZyme Rep_3176_c_94 Rep_3176_c_94_39 51089 52570 + GH77
pfam Rep_3176_c_94 Rep_3176_c_94_40 53046 53348 - DUF2089
pfam Rep_3176_c_94 Rep_3176_c_94_41 53489 55909 + UvrD-helicase | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
TC Rep_3176_c_94 Rep_3176_c_94_42 55913 56800 + 2.A.7.3.52
Gene ID: Rep_3176_c_94_35
Type: TC
Location: 44182 - 47106 (-)
Gene ID: Rep_3176_c_94_36
Type: TC
Location: 47381 - 48739 (+)
Gene ID: Rep_3176_c_94_37
Type: pfam
Location: 48821 - 49762 (-)
Gene ID: Rep_3176_c_94_38
Type: TC
Location: 49851 - 50789 (-)
Gene ID: Rep_3176_c_94_39
Type: CAZyme
Location: 51089 - 52570 (+)
Gene ID: Rep_3176_c_94_40
Type: pfam
Location: 53046 - 53348 (-)
Gene ID: Rep_3176_c_94_41
Type: pfam
Location: 53489 - 55909 (+)
Gene ID: Rep_3176_c_94_42
Type: TC
Location: 55913 - 56800 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3176_c_94_36 vegetarian > omnivore 1.42082 0.00082

🧭 Explore Read Mapping of CGC

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