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Cluster: Rep_315_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_315_c_248 Rep_315_c_248_11 8456 10048 + 3.A.2.1.3
TC Rep_315_c_248 Rep_315_c_248_12 10114 11004 + 3.A.2.1.1
STP Rep_315_c_248 Rep_315_c_248_13 11100 11702 + Fer4 | Fer4
pfam Rep_315_c_248 Rep_315_c_248_14 11725 12252 + Oxidored_q3
TC Rep_315_c_248 Rep_315_c_248_15 12259 12570 + 3.D.1.8.1
TC Rep_315_c_248 Rep_315_c_248_16 12601 14553 + 3.D.1.2.1
TC Rep_315_c_248 Rep_315_c_248_17 14584 16098 + 3.D.1.2.1
TC Rep_315_c_248 Rep_315_c_248_18 16132 17580 + 3.D.1.8.1
NULL(UNKNOWN) Rep_315_c_248 Rep_315_c_248_19 17986 18108 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_315_c_248 Rep_315_c_248_20 18115 20079 + GH133
CAZyme Rep_315_c_248 Rep_315_c_248_21 20093 21346 + GT4
CAZyme Rep_315_c_248 Rep_315_c_248_22 21397 22803 + GH57
TC Rep_315_c_248 Rep_315_c_248_23 22898 24238 - 9.B.126.2.2
Gene ID: Rep_315_c_248_11
Type: TC
Location: 8456 - 10048 (+)
Gene ID: Rep_315_c_248_12
Type: TC
Location: 10114 - 11004 (+)
Gene ID: Rep_315_c_248_13
Type: STP
Location: 11100 - 11702 (+)
Gene ID: Rep_315_c_248_14
Type: pfam
Location: 11725 - 12252 (+)
Gene ID: Rep_315_c_248_15
Type: TC
Location: 12259 - 12570 (+)
Gene ID: Rep_315_c_248_16
Type: TC
Location: 12601 - 14553 (+)
Gene ID: Rep_315_c_248_17
Type: TC
Location: 14584 - 16098 (+)
Gene ID: Rep_315_c_248_18
Type: TC
Location: 16132 - 17580 (+)
Gene ID: Rep_315_c_248_19
Type:
Location: 17986 - 18108 (+)
Gene ID: Rep_315_c_248_20
Type: CAZyme
Location: 18115 - 20079 (+)
Gene ID: Rep_315_c_248_21
Type: CAZyme
Location: 20093 - 21346 (+)
Gene ID: Rep_315_c_248_22
Type: CAZyme
Location: 21397 - 22803 (+)
Gene ID: Rep_315_c_248_23
Type: TC
Location: 22898 - 24238 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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