dbCAN Logo

Cluster: Rep_315_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_315_c_216 Rep_315_c_216_2 4426 6675 - GH43_24 | PL42
pfam Rep_315_c_216 Rep_315_c_216_3 6668 7579 - DUF4861
pfam Rep_315_c_216 Rep_315_c_216_4 7625 7942 - rhaM
CAZyme Rep_315_c_216 Rep_315_c_216_5 7969 10302 - GH105 | GH154
CAZyme Rep_315_c_216 Rep_315_c_216_6 10307 11383 - GH43_19
CAZyme Rep_315_c_216 Rep_315_c_216_7 11604 14441 + GH43_19 | GH43_29 | GH43_34
CAZyme Rep_315_c_216 Rep_315_c_216_8 14438 16411 + GH127
CAZyme Rep_315_c_216 Rep_315_c_216_9 16424 18403 + GH51_2
TC Rep_315_c_216 Rep_315_c_216_10 18635 19594 + 8.A.5.1.6
CAZyme Rep_315_c_216 Rep_315_c_216_11 19599 21632 + GH97
Gene ID: Rep_315_c_216_2
Type: CAZyme
Location: 4426 - 6675 (-)
Gene ID: Rep_315_c_216_3
Type: pfam
Location: 6668 - 7579 (-)
Gene ID: Rep_315_c_216_4
Type: pfam
Location: 7625 - 7942 (-)
Gene ID: Rep_315_c_216_5
Type: CAZyme
Location: 7969 - 10302 (-)
Gene ID: Rep_315_c_216_6
Type: CAZyme
Location: 10307 - 11383 (-)
Gene ID: Rep_315_c_216_7
Type: CAZyme
Location: 11604 - 14441 (+)
Gene ID: Rep_315_c_216_8
Type: CAZyme
Location: 14438 - 16411 (+)
Gene ID: Rep_315_c_216_9
Type: CAZyme
Location: 16424 - 18403 (+)
Gene ID: Rep_315_c_216_10
Type: TC
Location: 18635 - 19594 (+)
Gene ID: Rep_315_c_216_11
Type: CAZyme
Location: 19599 - 21632 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List