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Cluster: Rep_315_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_315_c_118 Rep_315_c_118_17 17338 18288 + GT2
pfam Rep_315_c_118 Rep_315_c_118_18 18288 18848 + DUF6452
pfam Rep_315_c_118 Rep_315_c_118_19 18845 19858 + DUF6048
CAZyme Rep_315_c_118 Rep_315_c_118_20 19859 20818 - GT2
pfam Rep_315_c_118 Rep_315_c_118_21 20825 21964 - GldN
TC Rep_315_c_118 Rep_315_c_118_22 22016 23593 - 9.A.25.1.1
pfam Rep_315_c_118 Rep_315_c_118_23 23610 24563 - GldL_N
TC Rep_315_c_118 Rep_315_c_118_24 24603 26096 - 9.A.25.1.1
pfam Rep_315_c_118 Rep_315_c_118_25 26104 27117 - PorP_SprF
TC Rep_315_c_118 Rep_315_c_118_26 27114 27857 - 1.B.44.1.1
Gene ID: Rep_315_c_118_17
Type: CAZyme
Location: 17338 - 18288 (+)
Gene ID: Rep_315_c_118_18
Type: pfam
Location: 18288 - 18848 (+)
Gene ID: Rep_315_c_118_19
Type: pfam
Location: 18845 - 19858 (+)
Gene ID: Rep_315_c_118_20
Type: CAZyme
Location: 19859 - 20818 (-)
Gene ID: Rep_315_c_118_21
Type: pfam
Location: 20825 - 21964 (-)
Gene ID: Rep_315_c_118_22
Type: TC
Location: 22016 - 23593 (-)
Gene ID: Rep_315_c_118_23
Type: pfam
Location: 23610 - 24563 (-)
Gene ID: Rep_315_c_118_24
Type: TC
Location: 24603 - 26096 (-)
Gene ID: Rep_315_c_118_25
Type: pfam
Location: 26104 - 27117 (-)
Gene ID: Rep_315_c_118_26
Type: TC
Location: 27114 - 27857 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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