Cluster: Rep_3138_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3138
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3138_c_43 | Rep_3138_c_43_6 | 11885 | 13558 | + | CBM34 | GH13_20 |
| pfam | Rep_3138_c_43 | Rep_3138_c_43_7 | 13560 | 15044 | + | SBP_bac_1 |
| TC | Rep_3138_c_43 | Rep_3138_c_43_8 | 15082 | 16395 | + | 3.A.1.1.27 |
| TC | Rep_3138_c_43 | Rep_3138_c_43_9 | 16392 | 17240 | + | 3.A.1.1.27 |
| CAZyme | Rep_3138_c_43 | Rep_3138_c_43_10 | 17245 | 18768 | + | GH13_36 |
Gene ID: Rep_3138_c_43_6
Type: CAZyme
Location: 11885 - 13558 (+)
Type: CAZyme
Location: 11885 - 13558 (+)
Gene ID: Rep_3138_c_43_7
Type: pfam
Location: 13560 - 15044 (+)
Type: pfam
Location: 13560 - 15044 (+)
Gene ID: Rep_3138_c_43_8
Type: TC
Location: 15082 - 16395 (+)
Type: TC
Location: 15082 - 16395 (+)
Gene ID: Rep_3138_c_43_9
Type: TC
Location: 16392 - 17240 (+)
Type: TC
Location: 16392 - 17240 (+)
Gene ID: Rep_3138_c_43_10
Type: CAZyme
Location: 17245 - 18768 (+)
Type: CAZyme
Location: 17245 - 18768 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp958428885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3138_c_43_6 | vegetarian > vegan | 1.64539 | 0.00353 |
| Rep_3138_c_43_7 | vegetarian > vegan | 1.56204 | 0.00353 |
| Rep_3138_c_43_8 | vegetarian > vegan | 1.46554 | 0.00353 |
| Rep_3138_c_43_9 | vegetarian > vegan | 2.13370 | 0.00353 |
| Rep_3138_c_43_10 | vegetarian > vegan | 1.36309 | 0.00353 |