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Cluster: Rep_3138_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3138_c_39 Rep_3138_c_39_20 21244 22341 + 3.A.7.19.1
TF Rep_3138_c_39 Rep_3138_c_39_21 22523 23560 + LacI
CAZyme Rep_3138_c_39 Rep_3138_c_39_22 23569 25254 + CBM34 | GH13_20
TC Rep_3138_c_39 Rep_3138_c_39_23 25351 26649 + 3.A.1.1.22
TC Rep_3138_c_39 Rep_3138_c_39_24 26727 28037 + 3.A.1.1.6
TC Rep_3138_c_39 Rep_3138_c_39_25 28034 28906 + 3.A.1.1.6
CAZyme Rep_3138_c_39 Rep_3138_c_39_26 28908 30842 + GH31_15
CAZyme Rep_3138_c_39 Rep_3138_c_39_27 30914 33154 + CBM20 | GH13_2
Gene ID: Rep_3138_c_39_20
Type: TC
Location: 21244 - 22341 (+)
Gene ID: Rep_3138_c_39_21
Type: TF
Location: 22523 - 23560 (+)
Gene ID: Rep_3138_c_39_22
Type: CAZyme
Location: 23569 - 25254 (+)
Gene ID: Rep_3138_c_39_23
Type: TC
Location: 25351 - 26649 (+)
Gene ID: Rep_3138_c_39_24
Type: TC
Location: 26727 - 28037 (+)
Gene ID: Rep_3138_c_39_25
Type: TC
Location: 28034 - 28906 (+)
Gene ID: Rep_3138_c_39_26
Type: CAZyme
Location: 28908 - 30842 (+)
Gene ID: Rep_3138_c_39_27
Type: CAZyme
Location: 30914 - 33154 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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