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Cluster: Rep_3138_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3138_c_3 Rep_3138_c_3_1 263 2431 - 9.A.8.1.6
TC Rep_3138_c_3 Rep_3138_c_3_2 2516 2737 - 9.A.8.1.6
STP Rep_3138_c_3 Rep_3138_c_3_3 2724 2960 - FeoA
TF Rep_3138_c_3 Rep_3138_c_3_4 3259 4269 + LacI
TC Rep_3138_c_3 Rep_3138_c_3_5 4329 5678 + 3.A.1.1.45
TC Rep_3138_c_3 Rep_3138_c_3_6 5767 6684 + 3.A.1.1.45
TC Rep_3138_c_3 Rep_3138_c_3_7 6684 7535 + 3.A.1.1.45
CAZyme Rep_3138_c_3 Rep_3138_c_3_8 7542 9083 + GH77
Gene ID: Rep_3138_c_3_1
Type: TC
Location: 263 - 2431 (-)
Gene ID: Rep_3138_c_3_2
Type: TC
Location: 2516 - 2737 (-)
Gene ID: Rep_3138_c_3_3
Type: STP
Location: 2724 - 2960 (-)
Gene ID: Rep_3138_c_3_4
Type: TF
Location: 3259 - 4269 (+)
Gene ID: Rep_3138_c_3_5
Type: TC
Location: 4329 - 5678 (+)
Gene ID: Rep_3138_c_3_6
Type: TC
Location: 5767 - 6684 (+)
Gene ID: Rep_3138_c_3_7
Type: TC
Location: 6684 - 7535 (+)
Gene ID: Rep_3138_c_3_8
Type: CAZyme
Location: 7542 - 9083 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3138_c_3_4 vegetarian > vegan 1.87792 0.00353
Rep_3138_c_3_8 vegetarian > vegan 1.19965 0.00353

🧭 Explore Read Mapping of CGC

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