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Cluster: Rep_3138_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3138_c_111 Rep_3138_c_111_14 13281 14117 - GT8
pfam Rep_3138_c_111 Rep_3138_c_111_15 14128 14670 - DUF308 | DUF308 | DUF308
NULL(UNKNOWN) Rep_3138_c_111 Rep_3138_c_111_16 14910 15365 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3138_c_111 Rep_3138_c_111_17 15367 17178 + 3.A.25.2.1
TC Rep_3138_c_111 Rep_3138_c_111_18 17227 18042 - 3.D.6.1.3
TC Rep_3138_c_111 Rep_3138_c_111_19 18055 18636 - 3.D.6.1.2
TC Rep_3138_c_111 Rep_3138_c_111_20 18636 19346 - 3.D.6.1.2
TC Rep_3138_c_111 Rep_3138_c_111_21 19361 19906 - 3.D.6.1.3
TC Rep_3138_c_111 Rep_3138_c_111_22 19899 20939 - 3.D.6.1.2
TC Rep_3138_c_111 Rep_3138_c_111_23 20939 22315 - 3.D.6.1.2
TC Rep_3138_c_111 Rep_3138_c_111_24 22608 23897 + 2.A.1.84.3
CAZyme Rep_3138_c_111 Rep_3138_c_111_25 23884 25605 + GH2
Gene ID: Rep_3138_c_111_14
Type: CAZyme
Location: 13281 - 14117 (-)
Gene ID: Rep_3138_c_111_15
Type: pfam
Location: 14128 - 14670 (-)
Gene ID: Rep_3138_c_111_16
Type:
Location: 14910 - 15365 (+)
Gene ID: Rep_3138_c_111_17
Type: TC
Location: 15367 - 17178 (+)
Gene ID: Rep_3138_c_111_18
Type: TC
Location: 17227 - 18042 (-)
Gene ID: Rep_3138_c_111_19
Type: TC
Location: 18055 - 18636 (-)
Gene ID: Rep_3138_c_111_20
Type: TC
Location: 18636 - 19346 (-)
Gene ID: Rep_3138_c_111_21
Type: TC
Location: 19361 - 19906 (-)
Gene ID: Rep_3138_c_111_22
Type: TC
Location: 19899 - 20939 (-)
Gene ID: Rep_3138_c_111_23
Type: TC
Location: 20939 - 22315 (-)
Gene ID: Rep_3138_c_111_24
Type: TC
Location: 22608 - 23897 (+)
Gene ID: Rep_3138_c_111_25
Type: CAZyme
Location: 23884 - 25605 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3138_c_111_21 vegetarian > omnivore 1.25450 0.00809
Rep_3138_c_111_23 vegetarian > omnivore 1.51841 0.00066

🧭 Explore Read Mapping of CGC

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