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Cluster: Rep_3138_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3138_c_102 Rep_3138_c_102_173 164666 165667 - 2.A.119.1.3
TF Rep_3138_c_102 Rep_3138_c_102_174 165750 166067 - HTH_5
CAZyme Rep_3138_c_102 Rep_3138_c_102_175 166259 167896 - GH66
TC Rep_3138_c_102 Rep_3138_c_102_176 167900 168724 - 3.A.1.1.34
TC Rep_3138_c_102 Rep_3138_c_102_177 168740 169603 - 3.A.1.1.42
STP Rep_3138_c_102 Rep_3138_c_102_178 169705 171039 - SBP_bac_1
TC Rep_3138_c_102 Rep_3138_c_102_179 171235 173028 + 8.A.59.2.1
Gene ID: Rep_3138_c_102_173
Type: TC
Location: 164666 - 165667 (-)
Gene ID: Rep_3138_c_102_174
Type: TF
Location: 165750 - 166067 (-)
Gene ID: Rep_3138_c_102_175
Type: CAZyme
Location: 166259 - 167896 (-)
Gene ID: Rep_3138_c_102_176
Type: TC
Location: 167900 - 168724 (-)
Gene ID: Rep_3138_c_102_177
Type: TC
Location: 168740 - 169603 (-)
Gene ID: Rep_3138_c_102_178
Type: STP
Location: 169705 - 171039 (-)
Gene ID: Rep_3138_c_102_179
Type: TC
Location: 171235 - 173028 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3138_c_102_173 vegetarian > vegan 1.86141 0.00353
Rep_3138_c_102_174 vegetarian > vegan 2.29203 0.00353

🧭 Explore Read Mapping of CGC

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