Cluster: Rep_3138_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3138
- CGC Family ID: CGCFAM_10982
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3138_c_75 | Rep_3138_c_75_35 | 38745 | 40298 | + | 3.A.1.2.12 |
| TC | Rep_3138_c_75 | Rep_3138_c_75_36 | 40282 | 41376 | + | 3.A.1.2.12 |
| TC | Rep_3138_c_75 | Rep_3138_c_75_37 | 41369 | 42334 | + | 3.A.1.2.18 |
| NULL(UNKNOWN) | Rep_3138_c_75 | Rep_3138_c_75_38 | 42339 | 42842 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3138_c_75 | Rep_3138_c_75_39 | 42899 | 44548 | - | GH13_31 |
Gene ID: Rep_3138_c_75_35
Type: TC
Location: 38745 - 40298 (+)
Type: TC
Location: 38745 - 40298 (+)
Gene ID: Rep_3138_c_75_36
Type: TC
Location: 40282 - 41376 (+)
Type: TC
Location: 40282 - 41376 (+)
Gene ID: Rep_3138_c_75_37
Type: TC
Location: 41369 - 42334 (+)
Type: TC
Location: 41369 - 42334 (+)
Gene ID: Rep_3138_c_75_38
Type:
Location: 42339 - 42842 (+)
Type:
Location: 42339 - 42842 (+)
Gene ID: Rep_3138_c_75_39
Type: CAZyme
Location: 42899 - 44548 (-)
Type: CAZyme
Location: 42899 - 44548 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp958428885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3138_c_75_35 | vegetarian > vegan | 1.19581 | 0.00353 |
| Rep_3138_c_75_36 | vegetarian > omnivore | 1.28864 | 0.00066 |
| Rep_3138_c_75_36 | vegetarian > vegan | 1.67639 | 0.00353 |
| Rep_3138_c_75_37 | vegetarian > vegan | 1.37002 | 0.00353 |