Cluster: Rep_3138_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_3138
- CGC Family ID: CGCFAM_00045
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3138_c_66 | Rep_3138_c_66_45 | 47329 | 48606 | + | 3.A.1.1.2 |
| TC | Rep_3138_c_66 | Rep_3138_c_66_46 | 48675 | 49556 | + | 3.A.1.1.2 |
| TC | Rep_3138_c_66 | Rep_3138_c_66_47 | 49559 | 50401 | + | 3.A.1.1.2 |
| CAZyme | Rep_3138_c_66 | Rep_3138_c_66_48 | 50404 | 52110 | + | CBM34 | GH13_20 |
| TC | Rep_3138_c_66 | Rep_3138_c_66_49 | 52189 | 52791 | - | 2.A.115.2.14 |
Gene ID: Rep_3138_c_66_45
Type: TC
Location: 47329 - 48606 (+)
Type: TC
Location: 47329 - 48606 (+)
Gene ID: Rep_3138_c_66_46
Type: TC
Location: 48675 - 49556 (+)
Type: TC
Location: 48675 - 49556 (+)
Gene ID: Rep_3138_c_66_47
Type: TC
Location: 49559 - 50401 (+)
Type: TC
Location: 49559 - 50401 (+)
Gene ID: Rep_3138_c_66_48
Type: CAZyme
Location: 50404 - 52110 (+)
Type: CAZyme
Location: 50404 - 52110 (+)
Gene ID: Rep_3138_c_66_49
Type: TC
Location: 52189 - 52791 (-)
Type: TC
Location: 52189 - 52791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp958428885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3138_c_66_47 | vegetarian > vegan | 2.14792 | 0.00353 |
| Rep_3138_c_66_49 | vegetarian > vegan | 1.87371 | 0.00353 |