dbCAN HGM

Cluster: Rep_3138_CGC11

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_3138_c_50	Rep_3138_c_50_20	28562	29227	+	3.A.1.125.2
TC	Rep_3138_c_50	Rep_3138_c_50_21	29362	30762	+	2.A.66.1.13
pfam	Rep_3138_c_50	Rep_3138_c_50_22	31092	32234	-	Gly_kinase
pfam	Rep_3138_c_50	Rep_3138_c_50_23	32608	33762	+	CBM26 \| CBM26 \| CBM26
TC	Rep_3138_c_50	Rep_3138_c_50_24	33830	35029	+	3.A.1.1.16
TC	Rep_3138_c_50	Rep_3138_c_50_25	35029	35934	+	3.A.1.1.41
TC	Rep_3138_c_50	Rep_3138_c_50_26	35931	36776	+	3.A.1.1.6
CAZyme	Rep_3138_c_50	Rep_3138_c_50_27	36779	38497	+	CBM34 \| GH13_20
TF	Rep_3138_c_50	Rep_3138_c_50_28	38504	39517	+	LacI
TC	Rep_3138_c_50	Rep_3138_c_50_29	39732	41126	+	2.A.66.1.32
TC	Rep_3138_c_50	Rep_3138_c_50_30	41189	42568	-	2.A.66.1.13
NULL(UNKNOWN)	Rep_3138_c_50	Rep_3138_c_50_31	42775	43182	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	Rep_3138_c_50	Rep_3138_c_50_32	43334	46381	+	SMC_N \| SMC_hinge \| AAA_15 \| AAA_23
TC	Rep_3138_c_50	Rep_3138_c_50_33	46360	47256	+	3.A.5.1.1

Gene ID: Rep_3138_c_50_20
Type: TC
Location: 28562 - 29227 (+)

Gene ID: Rep_3138_c_50_21
Type: TC
Location: 29362 - 30762 (+)

Gene ID: Rep_3138_c_50_22
Type: pfam
Location: 31092 - 32234 (-)

Gene ID: Rep_3138_c_50_23
Type: pfam
Location: 32608 - 33762 (+)

Gene ID: Rep_3138_c_50_24
Type: TC
Location: 33830 - 35029 (+)

Gene ID: Rep_3138_c_50_25
Type: TC
Location: 35029 - 35934 (+)

Gene ID: Rep_3138_c_50_26
Type: TC
Location: 35931 - 36776 (+)

Gene ID: Rep_3138_c_50_27
Type: CAZyme
Location: 36779 - 38497 (+)

Gene ID: Rep_3138_c_50_28
Type: TF
Location: 38504 - 39517 (+)

Gene ID: Rep_3138_c_50_29
Type: TC
Location: 39732 - 41126 (+)

Gene ID: Rep_3138_c_50_30
Type: TC
Location: 41189 - 42568 (-)

Gene ID: Rep_3138_c_50_31
Type:
Location: 42775 - 43182 (+)

Gene ID: Rep_3138_c_50_32
Type: pfam
Location: 43334 - 46381 (+)

Gene ID: Rep_3138_c_50_33
Type: TC
Location: 46360 - 47256 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_3138_c_50_23	vegetarian > vegan	2.16598	0.00353
Rep_3138_c_50_24	vegetarian > vegan	1.11092	0.00353
Rep_3138_c_50_26	vegetarian > vegan	2.19029	0.00353
Rep_3138_c_50_27	vegetarian > vegan	1.37466	0.00353
Rep_3138_c_50_28	vegetarian > vegan	1.77127	0.00353
Rep_3138_c_50_31	vegetarian > vegan	1.76065	0.00353