Cluster: Rep_312_CGC31
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_312
- CGC Family ID: CGCFAM_01250
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_312_c_274 | Rep_312_c_274_6 | 4396 | 5739 | + | 1.B.3.3.1 |
| peptidase | Rep_312_c_274 | Rep_312_c_274_7 | 5805 | 6965 | + | M75.UPW |
| pfam | Rep_312_c_274 | Rep_312_c_274_8 | 7023 | 8645 | + | DHOR |
| TC | Rep_312_c_274 | Rep_312_c_274_9 | 8635 | 10542 | + | 9.B.14.3.1 |
| NULL(UNKNOWN) | Rep_312_c_274 | Rep_312_c_274_10 | 10659 | 12230 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_312_c_274 | Rep_312_c_274_11 | 12429 | 14030 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_312_c_274 | Rep_312_c_274_12 | 14137 | 14961 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_312_c_274 | Rep_312_c_274_13 | 15091 | 17196 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_312_c_274 | Rep_312_c_274_14 | 17212 | 20502 | - | 1.B.14.6.1 |
| STP | Rep_312_c_274 | Rep_312_c_274_15 | 21192 | 24929 | + | HATPase_c | HisKA | Reg_prop | Response_reg | Y_Y_Y |
| TF | Rep_312_c_274 | Rep_312_c_274_16 | 24869 | 25276 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_312_c_274 | Rep_312_c_274_17 | 25335 | 25844 | + | GH105 |
Gene ID: Rep_312_c_274_6
Type: TC
Location: 4396 - 5739 (+)
Type: TC
Location: 4396 - 5739 (+)
Gene ID: Rep_312_c_274_7
Type: peptidase
Location: 5805 - 6965 (+)
Type: peptidase
Location: 5805 - 6965 (+)
Gene ID: Rep_312_c_274_8
Type: pfam
Location: 7023 - 8645 (+)
Type: pfam
Location: 7023 - 8645 (+)
Gene ID: Rep_312_c_274_9
Type: TC
Location: 8635 - 10542 (+)
Type: TC
Location: 8635 - 10542 (+)
Gene ID: Rep_312_c_274_10
Type:
Location: 10659 - 12230 (-)
Type:
Location: 10659 - 12230 (-)
Gene ID: Rep_312_c_274_11
Type: CAZyme
Location: 12429 - 14030 (-)
Type: CAZyme
Location: 12429 - 14030 (-)
Gene ID: Rep_312_c_274_12
Type:
Location: 14137 - 14961 (-)
Type:
Location: 14137 - 14961 (-)
Gene ID: Rep_312_c_274_13
Type: pfam
Location: 15091 - 17196 (-)
Type: pfam
Location: 15091 - 17196 (-)
Gene ID: Rep_312_c_274_14
Type: TC
Location: 17212 - 20502 (-)
Type: TC
Location: 17212 - 20502 (-)
Gene ID: Rep_312_c_274_15
Type: STP
Location: 21192 - 24929 (+)
Type: STP
Location: 21192 - 24929 (+)
Gene ID: Rep_312_c_274_16
Type: TF
Location: 24869 - 25276 (+)
Type: TF
Location: 24869 - 25276 (+)
Gene ID: Rep_312_c_274_17
Type: CAZyme
Location: 25335 - 25844 (+)
Type: CAZyme
Location: 25335 - 25844 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.