Cluster: Rep_3115_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3115
- CGC Family ID: CGCFAM_03362
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3115_c_4 | Rep_3115_c_4_59 | 62713 | 63558 | - | 3.A.1.1.34 |
| TC | Rep_3115_c_4 | Rep_3115_c_4_60 | 63570 | 64454 | - | 3.A.1.1.34 |
| STP | Rep_3115_c_4 | Rep_3115_c_4_61 | 64556 | 65866 | - | SBP_bac_1 |
| CAZyme | Rep_3115_c_4 | Rep_3115_c_4_62 | 65863 | 67629 | - | CBM34 | GH13_20 |
Gene ID: Rep_3115_c_4_59
Type: TC
Location: 62713 - 63558 (-)
Type: TC
Location: 62713 - 63558 (-)
Gene ID: Rep_3115_c_4_60
Type: TC
Location: 63570 - 64454 (-)
Type: TC
Location: 63570 - 64454 (-)
Gene ID: Rep_3115_c_4_61
Type: STP
Location: 64556 - 65866 (-)
Type: STP
Location: 64556 - 65866 (-)
Gene ID: Rep_3115_c_4_62
Type: CAZyme
Location: 65863 - 67629 (-)
Type: CAZyme
Location: 65863 - 67629 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.