Cluster: Rep_3115_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3115
- CGC Family ID: CGCFAM_00545
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3115_c_3 | Rep_3115_c_3_37 | 41407 | 41889 | - | 4.A.6.1.3 |
| CAZyme | Rep_3115_c_3 | Rep_3115_c_3_38 | 41931 | 43100 | - | CE9 |
| TC | Rep_3115_c_3 | Rep_3115_c_3_39 | 43477 | 44313 | - | 4.A.6.1.16 |
| TC | Rep_3115_c_3 | Rep_3115_c_3_40 | 44331 | 45074 | - | 4.A.6.1.19 |
| pfam | Rep_3115_c_3 | Rep_3115_c_3_41 | 45109 | 45519 | - | EIIA-man |
| TC | Rep_3115_c_3 | Rep_3115_c_3_42 | 45585 | 47297 | - | 8.A.7.1.1 |
Gene ID: Rep_3115_c_3_37
Type: TC
Location: 41407 - 41889 (-)
Type: TC
Location: 41407 - 41889 (-)
Gene ID: Rep_3115_c_3_38
Type: CAZyme
Location: 41931 - 43100 (-)
Type: CAZyme
Location: 41931 - 43100 (-)
Gene ID: Rep_3115_c_3_39
Type: TC
Location: 43477 - 44313 (-)
Type: TC
Location: 43477 - 44313 (-)
Gene ID: Rep_3115_c_3_40
Type: TC
Location: 44331 - 45074 (-)
Type: TC
Location: 44331 - 45074 (-)
Gene ID: Rep_3115_c_3_41
Type: pfam
Location: 45109 - 45519 (-)
Type: pfam
Location: 45109 - 45519 (-)
Gene ID: Rep_3115_c_3_42
Type: TC
Location: 45585 - 47297 (-)
Type: TC
Location: 45585 - 47297 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.