Cluster: Rep_3115_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3115
- CGC Family ID: CGCFAM_07861
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3115_c_2 | Rep_3115_c_2_60 | 62708 | 64429 | + | 4.C.1.1.7 |
| pfam | Rep_3115_c_2 | Rep_3115_c_2_61 | 64640 | 64981 | + | Ribosomal_L19 |
| CAZyme | Rep_3115_c_2 | Rep_3115_c_2_62 | 65079 | 66215 | + | GT4 |
| pfam | Rep_3115_c_2 | Rep_3115_c_2_63 | 66220 | 67680 | + | O-antigen_lig |
| CAZyme | Rep_3115_c_2 | Rep_3115_c_2_64 | 67677 | 68612 | + | GT2 |
| CAZyme | Rep_3115_c_2 | Rep_3115_c_2_65 | 68652 | 69644 | - | GT2 |
Gene ID: Rep_3115_c_2_60
Type: TC
Location: 62708 - 64429 (+)
Type: TC
Location: 62708 - 64429 (+)
Gene ID: Rep_3115_c_2_61
Type: pfam
Location: 64640 - 64981 (+)
Type: pfam
Location: 64640 - 64981 (+)
Gene ID: Rep_3115_c_2_62
Type: CAZyme
Location: 65079 - 66215 (+)
Type: CAZyme
Location: 65079 - 66215 (+)
Gene ID: Rep_3115_c_2_63
Type: pfam
Location: 66220 - 67680 (+)
Type: pfam
Location: 66220 - 67680 (+)
Gene ID: Rep_3115_c_2_64
Type: CAZyme
Location: 67677 - 68612 (+)
Type: CAZyme
Location: 67677 - 68612 (+)
Gene ID: Rep_3115_c_2_65
Type: CAZyme
Location: 68652 - 69644 (-)
Type: CAZyme
Location: 68652 - 69644 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.